PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G468700.5.p
Common NameLOC101780320, SETIT_000591mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB_related
Protein Properties Length: 662aa    MW: 71847.5 Da    PI: 9.5069
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G468700.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.82.1e-07562611147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                         r++++  E e lv+av+qlG+g+W+ +  +      +Rt  ++k++w ++
  Seita.5G468700.5.p 562 RMPFSVGEVEALVEAVEQLGTGRWRDVKMHAFdgaDHRTYVDLKDKWKTL 611
                         7899999********************9999899*************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542362.17E-7368444IPR029071Ubiquitin-related domain
PROSITE profilePS500539.286374444IPR000626Ubiquitin domain
PROSITE profilePS5129415.733557616IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.1E-9558613IPR009057Homeodomain-like
SMARTSM007176.4E-7561614IPR001005SANT/Myb domain
CDDcd116602.00E-16564613No hitNo description
SuperFamilySSF466899.37E-15564644IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0032204Biological Processregulation of telomere maintenance
GO:0042162Molecular Functiontelomeric DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MVSQKRLGYG SRGRQIPAMP RVPNSVRGKR TTRRKKNEMC AFDLLASVAG TLLTDQDSSS  60
YVPNTSGAAT SYARNRKSVK EEYFDEILHL KNVAVKKDCG SGCVVGSGGV SALPRKGNDG  120
LAENSLTRNE DESVLKSLTV KSNMLARDSS VRCTRPCEIS RGLGIICEYG AFGVFHPGSS  180
SSAEAGQAHQ AEPKVIRSKA DGHTAALDSL FDSVDLDGRP PALVSSDSSS GVLLCSHDKE  240
HKAASLCQVE MQHTADRDDD ENSSGCTHPS TTGNEGYKPH FLGNHRIRKL LASKVRKAAR  300
NKTSGGMSSK GSKLNFCGKK IPTTRQKVQR TNFKRKKLAR GTTPFAKGML TGATGTSFRM  360
QGQNKSCGSE DYHVKLRIKS FNIPELFVEI PETATIGSLK RTVMDVVTSI MEGGLRVGVL  420
LQGKSIQDDS KTLRQAGICH GEKLNNIDFT LECERQQDSP SGVIIAEEMD FVSADIVEPL  480
ARMKYEEPFP GTKGGGGNQQ PIKAYPNDSF AGCVHRPVEM ASQDASASLQ AIIPVAASDL  540
NALAIVPICK TRRSEFGQRR TRMPFSVGEV EALVEAVEQL GTGRWRDVKM HAFDGADHRT  600
YVDLKDKWKT LVHTASISPQ QRRGEPVPQE LLDRVLSAQA YWSQQQAKLH GKAPLPEICL  660
A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A8e-555506505105Telomere binding protein TBP1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012701182.10.0PREDICTED: telomere-binding protein 1
SwissprotQ9LL450.0TBP1_ORYSJ; Telomere-binding protein 1
TrEMBLK3XFC20.0K3XFC2_SETIT; Uncharacterized protein
STRINGSi000591m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.18e-76TRF-like 2